Mir-7371-P28a

MirGeneDB ID

Sha-Mir-7371-P28a

Family name

MIR-7371 (all species)

Seed

CUCGGAU

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Mir-7371-o1 Sha-Mir-7371-o2 Sha-Mir-7371-o3 Sha-Mir-7371-o4-v1 Sha-Mir-7371-o4-v2 Sha-Mir-7371-o13 Sha-Mir-7371-o14 Sha-Mir-7371-o15 Sha-Mir-7371-o16 Sha-Mir-7371-o17 Sha-Mir-7371-o18 Sha-Mir-7371-o19 Sha-Mir-7371-o20 Sha-Mir-7371-o24 Sha-Mir-7371-o25 Sha-Mir-7371-o26 Sha-Mir-7371-o27 Sha-Mir-7371-o28 Sha-Mir-7371-P11d Sha-Mir-7371-P11e Sha-Mir-7371-P12a Sha-Mir-7371-P12b Sha-Mir-7371-P13 Sha-Mir-7371-P15 Sha-Mir-7371-P17 Sha-Mir-7371-P18 Sha-Mir-7371-P19-v1 Sha-Mir-7371-P19-v2 Sha-Mir-7371-P20 Sha-Mir-7371-P25 Sha-Mir-7371-P28b Sha-Mir-7371-P29 Sha-Mir-7371-P39

Orthologues

Mdo-Mir-7371-P28a Neu-Mir-7371-P28a

Node of Origin (locus)

Marsupialia

Node of Origin (family)

Marsupialia

Genome context
(DEVIL_add)

GL867599.1: 291545-291603 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUCCUGCGACUAUCCCUUACCAUCAGACUUACUCGGAUAAGGCACUCUAUUUUGUGGAUUCUACCAAAAUAAAUGCCUUGUCCUUGGGAGGCUGUUGGGAAAGAAGACUUUUGGAUUGA

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Structure

        10          20        30          40        50         
CUCCUGCGACUAUCCCUUA--|  U   A   A   --          CUC      GUGGA 
                     CCA CAG CUU CUC  GGAUAAGGCA   UAUUUU     U
                     GGU GUC GGA GGG  CCUGUUCCGU   AUAAAA     U
AGUUAGGUUUUCAGAAGAAAG^  U   -   -   UU          AA-      CCAUC 
       110       100         90         80         70        60

Deep sequencing

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3' NTU

Yes

Motifs

UGUG in loop

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Mature sequence

Sha-Mir-7371-P28a_5p

mirBase accession

None

Sequence

0- ACUCGGAUAAGGCACUCUAUUUU -23

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Star sequence

Sha-Mir-7371-P28a_3p*

mirBase accession

None

Sequence

37- AAUAAAUGCCUUGUCCUUGGGA -59

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