Mir-7371-o17

MirGeneDB ID

Sha-Mir-7371-o17

Family name

MIR-7371 (all species)

Seed

CUUGGAU

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Mir-7371-o1 Sha-Mir-7371-o2 Sha-Mir-7371-o3 Sha-Mir-7371-o4-v1 Sha-Mir-7371-o4-v2 Sha-Mir-7371-o13 Sha-Mir-7371-o14 Sha-Mir-7371-o15 Sha-Mir-7371-o16 Sha-Mir-7371-o18 Sha-Mir-7371-o19 Sha-Mir-7371-o20 Sha-Mir-7371-o24 Sha-Mir-7371-o25 Sha-Mir-7371-o26 Sha-Mir-7371-o27 Sha-Mir-7371-o28 Sha-Mir-7371-P11d Sha-Mir-7371-P11e Sha-Mir-7371-P12a Sha-Mir-7371-P12b Sha-Mir-7371-P13 Sha-Mir-7371-P15 Sha-Mir-7371-P17 Sha-Mir-7371-P18 Sha-Mir-7371-P19-v1 Sha-Mir-7371-P19-v2 Sha-Mir-7371-P20 Sha-Mir-7371-P25 Sha-Mir-7371-P28a Sha-Mir-7371-P28b Sha-Mir-7371-P29 Sha-Mir-7371-P39

Orthologues

Mdo-Mir-7371-P17 Neu-Mir-7371-P17

Node of Origin (locus)

S. harrisii

Node of Origin (family)

Marsupialia

Genome context
(DEVIL_add)

GL867599.1: 284637-284696 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAAAAUUUAGCUAGCCUGCCCAGCAGCCUUGCUUGGAUAAGGUAUUCUUAUUUUGUGUAUUUUGUGAGAAUAAUUUACCUUAUCCUUGGAAGCUGUUGGGAAAAACCUUCCCAGCAGAAU

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Structure

        10          20        30         40        50        60
GAAAAUUUAGCUAGCCUG--|        CUUG  U-          UUC      UGUGUA 
                    CCCAGCAGC    CU  GGAUAAGGUA   UUAUUU      U
                    GGGUUGUCG    GG  CCUAUUCCAU   AAUAAG      U
UAAGACGACCCUUCCAAAAA^        AA--  UU          UU-      AGUGUU 
.       110       100        90          80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Mature sequence

Sha-Mir-7371-o17_5p

mirBase accession

None

Sequence

0- GCUUGGAUAAGGUAUUCUUAUUU -23

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Co-mature sequence

Sha-Mir-7371-o17_3p

mirBase accession

None

Sequence

38- AAUAAUUUACCUUAUCCUUGGA -60

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