Mir-7371-P28a

MirGeneDB ID

Neu-Mir-7371-P28a

Family name

MIR-7371 (all species)

Seed

CUUGGAC

Species

Tammar Wallaby (Notamacropus eugenii)

MiRBase ID

Paralogues

Neu-Mir-7371-o29 Neu-Mir-7371-o30 Neu-Mir-7371-o31-v1 Neu-Mir-7371-o31-v2 Neu-Mir-7371-o32-v1 Neu-Mir-7371-o32-v2 Neu-Mir-7371-o33 Neu-Mir-7371-P11 Neu-Mir-7371-P12a Neu-Mir-7371-P12b Neu-Mir-7371-P15 Neu-Mir-7371-P17 Neu-Mir-7371-P18 Neu-Mir-7371-P19-v1 Neu-Mir-7371-P19-v2 Neu-Mir-7371-P20 Neu-Mir-7371-P24 Neu-Mir-7371-P25 Neu-Mir-7371-P28b Neu-Mir-7371-P29 Neu-Mir-7371-P39

Orthologues

Mdo-Mir-7371-P28a Sha-Mir-7371-o28 Sha-Mir-7371-P28a

Node of Origin (locus)

Marsupialia

Node of Origin (family)

Marsupialia

Genome context
(GCA_028372415.1_mMacEug1.pri)

CM051820.1: 70692408-70692467 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCUCCUGCCACAAGCCCUUCCAUCAGGCUUACUUGGACAAGGCACUCUAUUUUGUGAAUACUACCAAAAUAAAUGCCUUGUCCUUGGGAGGCUGUUGAGAAAGAACUUUCCAGCCAAACC

Get precursor sequence

Structure

        10          20         30        40        50         
UCUCCUGCCACAAGCCC--   -| U   G   ACUU          CUC      GUGAA 
                   UUC CA CAG CUU    GGACAAGGCA   UAUUUU     U
                   AAG GU GUC GAG    CCUGUUCCGU   AUAAAA     A
CCAAACCGACCUUUCAAGA   A^ U   G   GGUU          AA-      CCAUC 
.       110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Yes

Motifs

UGUG in loop

Tissue expression

Br	Ce	Fi	Li	Mi	Mi	Mi	Mi	Mi	Ov	Se	Se	Te	Te	Te

Mature sequence

Neu-Mir-7371-P28a_5p

mirBase accession

None

Sequence

0- ACUUGGACAAGGCACUCUAUUUU -23

Get sequence

Star sequence

Neu-Mir-7371-P28a_3p*

mirBase accession

None

Sequence

37- AAUAAAUGCCUUGUCCUUGGGAG -60

Get sequence