| MirGeneDB ID | Mdo-Mir-7319 |
|---|
| Family name |
MIR-7319 (all species) |
|---|
| Seed |
AAGUUGG |
|---|
| Species |
Gray short-tailed opossum (Monodelphis domestica) |
|---|
| MiRBase ID |
mdo-mir-7319
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Neu-Mir-7319
Sha-Mir-7319
|
|---|
| Node of Origin (locus) |
Marsupialia
|
|---|
| Node of Origin (family) |
Marsupialia
|
|---|
Genome context
(monDom5_add) |
5: 268329078-268329139 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CCUCGCUGUGUGACCGUGGGCGGGUCACGCCCCCUCUCUGGGCCUCCUGUUUCCUCAUCUGUAAAAUGGGAAAGUUGGACUAGAGAUGGUGUCUGACCUCCCUCUUAGCCAGGAAGCCUGUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CCUCGCUGUGUGACCGU---| C C C C G UC G CUCAUCU
GGG GGGUCA GC CC UCUCUGG CC CU UUUC \
CCC UCCAGU UG GG AGAGAUC GG GA AAGG G
GUGUCCGAAGGACCGAUUCU^ - C U U A UU - GUAAAAU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Yes
|
|---|
| Motifs | UG at 5p(-14) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Mdo-Mir-7319_5p* |
| mirBase accession | MIMAT0028638 |
|---|
| Sequence |
0- CCCCUCUCUGGGCCUCCUGUUUC -23
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: mdo-miR-7319-5p
|
|---|
| Mature sequence |
Mdo-Mir-7319_3p |
| mirBase accession | MIMAT0028639 |
|---|
| Sequence |
40- AAAGUUGGACUAGAGAUGGUGU -62
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: mdo-miR-7319-3p
|
|---|
