| MirGeneDB ID | Sha-Mir-12470 |
|---|
| Family name |
MIR-12470 (all species) |
|---|
| Seed |
GGCAGCA |
|---|
| Species |
Tasmanian devil (Sarcophilus harrisii) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Neu-Mir-12470
|
|---|
| Node of Origin (locus) |
Australidelphia
|
|---|
| Node of Origin (family) |
Australidelphia
|
|---|
Genome context
(DEVIL_add) |
GL850009.1: 278238-278296 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CGGGAGGAAGCCCCGCCUUGUGGGGGGGCGUGGCAGCAGGUGAUUGCUGAGGCUGAGGCUUCUUUAGGCCCCAGCUCUCACCUCCCACUCCCCCUCACAACCAACCCCUCGCCCGCCUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CGGGAGGAAGCCCCGCC--| C CAGC UU A GAGGC
UUGUGGGGGGG GUGG AGGUGA GCUG GGCU U
AACACUCCCCC CACC UCCACU CGAC CCGG U
GUCCGCCCGCUCCCCAACC^ U C--- CU C AUUUC
110 100 90 80 70 |
|---|
| Deep sequencing |
|
|---|
| Comment | Although apparently lost in Monodelphis the gene is present in other Didelphids. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
| |
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Sha-Mir-12470_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGGCAGCAGGUGAUUGCUGAGGCU -24
Get sequence
|
|---|
| Star sequence |
Sha-Mir-12470_3p* |
| mirBase accession | None |
|---|
| Sequence |
38- CCCCAGCUCUCACCUCCCACU -59
Get sequence
|
|---|
