| MirGeneDB ID | Mdo-Mir-1549 |
|---|
| Family name |
MIR-1549 (all species) |
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| Seed |
UCCGCCC |
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| Species |
Gray short-tailed opossum (Monodelphis domestica) |
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| MiRBase ID |
mdo-mir-1549b
|
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| Paralogues |
|
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| Orthologues |
Sha-Mir-1549
|
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| Node of Origin (locus) |
Marsupialia
|
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| Node of Origin (family) |
Marsupialia
|
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Genome context
(monDom5_add) |
Un: 60423751-60423809 [+]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
AGAAUAAGGACGCGUGUUUGUUCGUAACUCGCCGGGCUCGUAGGUAGAAGCUGAGUUUUGUUUUGCUUCCGCCCUGCAAGCCCGGUAGCUGGGAACAAAUUUCGCUUAGCUCCGACUGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGAAUAAGGACGCGUGU----| G A C C - UA UGAGUU
UUGUUC UA CU GCCGGGCU GUAG G GAAGC \
AACAAG GU GA UGGCCCGA CGUC C CUUCG U
UGUCAGCCUCGAUUCGCUUUA^ G C - A C GC UUUUGU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Mdo-Mir-1549_5p* |
| mirBase accession | MIMAT0050368 |
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| Sequence |
0- GCCGGGCUCGUAGGUAGAAGC -21
Get sequence
|
|---|
| Mature sequence |
Mdo-Mir-1549_3p |
| mirBase accession | MIMAT0050369 |
|---|
| Sequence |
36- UUCCGCCCUGCAAGCCCGGUAGC -59
Get sequence
|
|---|
