| MirGeneDB ID | Mdo-Mir-1542 |
|---|
| Family name |
MIR-1542 (all species) |
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| Seed |
AUUGAUC |
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| Species |
Gray short-tailed opossum (Monodelphis domestica) |
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| MiRBase ID |
mdo-mir-1542-2
|
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| Paralogues |
|
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| Orthologues |
Neu-Mir-1542
Sha-Mir-1542
|
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| Node of Origin (locus) |
Marsupialia
|
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| Node of Origin (family) |
Marsupialia
|
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Genome context
(monDom5_add) |
8: 87784990-87785051 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GUUGAUGGAUCUCCAAUGCCUAGUACAGUGCCUGGCACAUAGGAGCUUCAUAAAUGUGUGUUGAUUUAUUUAUUGAUCUCCAAUGCCUAGCACUGUGCCUGGCAAUAAGAGCUUCAUAAAGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GUUGAUGGAUCUCCAAU--| UA CU CAUA CU - UGUGUG
GCC GUACAGUGC GGCA GGAG UCA UAAA U
CGG CGUGUCACG CCGU CCUC AGU AUUU U
GGAAAUACUUCGAGAAUAA^ UC AU AA-- U- U AUUUAG
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Mdo-Mir-1542_5p* |
| mirBase accession | MIMAT0031061 |
|---|
| Sequence |
0- CCUGGCACAUAGGAGCUUCAUAAA -24
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: mdo-miR-1542-2-5p
|
|---|
| Mature sequence |
Mdo-Mir-1542_3p |
| mirBase accession | MIMAT0006141 |
|---|
| Sequence |
40- UAUUGAUCUCCAAUGCCUAGCA -62
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: mdo-miR-1542-3p
|
|---|
