| MirGeneDB ID | Mdo-Mir-7250 |
|---|
| Family name |
MIR-7250 (all species) |
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| Seed |
ACGGCCC |
|---|
| Species |
Gray short-tailed opossum (Monodelphis domestica) |
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| MiRBase ID |
mdo-mir-7250
|
|---|
| Paralogues |
|
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| Orthologues |
Neu-Mir-7250
Sha-Mir-7250
|
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| Node of Origin (locus) |
Marsupialia
|
|---|
| Node of Origin (family) |
Marsupialia
|
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Genome context
(monDom5_add) |
1: 318718771-318718830 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CUGCAGGGAAACUUCAUGACCUUGUGGUUCUACGGCCCCUCCAGGGAACCACGUGCAUGAGGGAACUACGUGGCCCCAGGAGAGGAUGGAACCACAUGGCUCCAGAGAUGGCAGUGGAUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CUGCAGGGAAACUUCAU- -| U CGG C A AA CAUGA
GA CC UGUGGUUCUA CC CUCC GGG CCACGUG \
CU GG ACACCAAGGU GG GAGG CCC GGUGCAU G
GUAGGUGACGGUAGAGAC C^ U A-- A A C- CAAGG
. 110 100 90 80 70 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Mdo-Mir-7250_5p |
| mirBase accession | MIMAT0028466 |
|---|
| Sequence |
0- UACGGCCCCUCCAGGGAACCACGUG -25
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: mdo-miR-7250-5p
|
|---|
| Star sequence |
Mdo-Mir-7250_3p* |
| mirBase accession | MIMAT0028467 |
|---|
| Sequence |
38- CGUGGCCCCAGGAGAGGAUGGA -60
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: mdo-miR-7250-3p
|
|---|
