| MirGeneDB ID | Mdo-Mir-12465 |
|---|
| Family name |
MIR-12465 (all species) |
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| Seed |
UCAACAC |
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| Species |
Gray short-tailed opossum (Monodelphis domestica) |
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| MiRBase ID |
mdo-mir-505
|
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| Paralogues |
|
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| Orthologues |
Neu-Mir-12465
Sha-Mir-12465
|
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| Node of Origin (locus) |
Marsupialia
|
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| Node of Origin (family) |
Marsupialia
|
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Genome context
(monDom5_add) |
6: 32562783-32562842 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
AAAUGGUGAUCAACUCAUGGAUGUUCUGGAAGGGGAACCAGGUGAUUGCGUGCCUAUUGAAGACAGCAUCAACACUUCUUGUUUCUCUCUCCAGAGCAUCAUUCAACAAACAAAGUUGUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AAAUGGUGAUCAACUCAUG- - C--| A C CUAUU
GAUGUUCUGGA AGGGGAAC AGGUG UUG GUGC G
CUACGAGACCU UCUCUUUG UUCAC AAC UACG A
UUGUUGAAACAAACAACUUA C UUC^ - - ACAGA
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | Although named mir-505 by miRBase this locus is neither similar in sequence nor syntenic with Mir-505 in eutherian mammals and thus is given a different name. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
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Tissue expression
|
|
|---|
| Star sequence |
Mdo-Mir-12465_5p* |
| mirBase accession | MIMAT0028662 |
|---|
| Sequence |
0- AGGGGAACCAGGUGAUUGCGUGC -23
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: mdo-miR-505-5p
|
|---|
| Mature sequence |
Mdo-Mir-12465_3p |
| mirBase accession | MIMAT0028663 |
|---|
| Sequence |
37- AUCAACACUUCUUGUUUCUCUCU -60
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: mdo-miR-505-3p
|
|---|
