MirGeneDB ID | Mdo-Mir-7293 |
Family name |
MIR-7293 (all species) |
Seed |
CGCUGGG |
Species |
Gray short-tailed opossum (Monodelphis domestica) |
MiRBase ID |
mdo-mir-7293
|
Paralogues |
|
Orthologues |
Neu-Mir-7293
Sha-Mir-7293
|
Node of Origin (locus) |
Marsupialia
|
Node of Origin (family) |
Marsupialia
|
Genome context (monDom5_add) |
3: 362140420-362140476 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGCUGCUGUUCAGAGUAGCAGGUGAUGGGCAGCAGAAAUGCCCCAGCUCCCAGUGGUAAUAGACAGGCGCUGGGGAAUUUCUGCCACCUGUCAGCUCUGCUUUCAGCGGCAGAGCUA
Get precursor sequence
|
Structure | 10 20 30 40 50
GGCUGCUGUUCAGAGUA---|C G CA G U CAGUGGU
G AG UGAUGGG GCAGAAAU CCCCAGC CC \
C UC ACUGUCC CGUCUUUA GGGGUCG GG A
AUCGAGACGGCGACUUUCGU^- G AC A C ACAGAUA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Mdo-Mir-7293_5p* |
mirBase accession | MIMAT0028570 |
Sequence |
0- AGCAGAAAUGCCCCAGCUCCC -21
Get sequence
|
Proposed targets |
TargetScanVert: mdo-miR-7293-5p
|
Mature sequence |
Mdo-Mir-7293_3p |
mirBase accession | MIMAT0028571 |
Sequence |
36- GCGCUGGGGAAUUUCUGCCAC -57
Get sequence
|
Proposed targets |
TargetScanVert: mdo-miR-7293-3p
|