| MirGeneDB ID | Mdo-Mir-12468 |
|---|
| Family name |
MIR-12468 (all species) |
|---|
| Seed |
AGUAAUG |
|---|
| Species |
Gray short-tailed opossum (Monodelphis domestica) |
|---|
| MiRBase ID |
mdo-mir-340
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Neu-Mir-12468
Sha-Mir-12468
|
|---|
| Node of Origin (locus) |
Marsupialia
|
|---|
| Node of Origin (family) |
Marsupialia
|
|---|
Genome context
(monDom5_add) |
1: 72641020-72641075 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AAAAUGGACGGUGAUCAAGGUGUGACUAUAAAGUAAUGAGAUUGAUUUCUGUGGUAUAGUAAAUGGAAAUCAGUUUCAUUACCUUACAGUCACAUCUAAUCUUCUACAAUGUUGUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AAAAUGGACGGUGAUCA--| A A GGUA
AGGUGUGACU UAA GUAAUGAGAUUGAUUUCUGU U
UCUACACUGA AUU CAUUACUUUGACUAAAGGUA A
UUGUUGUAACAUCUUCUAA^ C C AAUG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Mdo-Mir-12468_5p |
| mirBase accession | MIMAT0006143 |
|---|
| Sequence |
0- AAGUAAUGAGAUUGAUUUCUGU -22
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: mdo-miR-340-5p
|
|---|
| Star sequence |
Mdo-Mir-12468_3p* |
| mirBase accession | MIMAT0026767 |
|---|
| Sequence |
34- GGAAAUCAGUUUCAUUACCUUA -56
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: mdo-miR-340-3p
|
|---|
