| MirGeneDB ID | Mdo-Mir-7383-P3 |
|---|
| Family name |
MIR-7383 (all species) |
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| Seed |
AAGGUAC |
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| Species |
Gray short-tailed opossum (Monodelphis domestica) |
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| MiRBase ID |
mdo-mir-7383-5
|
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| Paralogues |
Mdo-Mir-7383-P1a
Mdo-Mir-7383-P1b
Mdo-Mir-7383-P1c
Mdo-Mir-7383-P2
|
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| Orthologues |
|
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| Node of Origin (locus) |
M. domestica
|
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| Node of Origin (family) |
Marsupialia
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Genome context
(monDom5_add) |
X: 22358078-22358136 [+]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
CUUUUCUCAGCUCUCAUGAUUGGUGUAUUCCAAGGUACCUGAGGUCCUCUUAUUUUGUUUAGAUUGUAAGAGGCUCCAGCUCCCUUUGUCUACUCCAAUAGAAAACUCUAUUUCCUAUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUUUUCUCAGCUCUCAUG--| U UUCC UAC AG U UUUUGU
AUUGG GUA AAGG CUG G CCUCUUA U
UAACC CAU UUCC GAC C GGAGAAU U
GUAUCCUUUAUCUCAAAAGA^ U CUGU CUC CU - GUUAGA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Dicer cut +1 relative to what is annoated here and which corresponds to the Dicer cut in Sarcophilus harrisii. |
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14) |
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Tissue expression
|
|
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| Mature sequence |
Mdo-Mir-7383-P3_5p |
| mirBase accession | MIMAT0028822 |
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| Sequence |
0- CAAGGUACCUGAGGUCCUCUUA -22
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: mdo-miR-7383-5p
|
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| Star sequence |
Mdo-Mir-7383-P3_3p* |
| mirBase accession | MIMAT0028823 |
|---|
| Sequence |
38- AGAGGCUCCAGCUCCCUUUGU -59
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: mdo-miR-7383-3p
|
|---|
