MirGeneDB ID | Mgi-Novel-1 |
Family name |
MGI-NOVEL-1 (all species) |
Seed |
GGCGAGC |
Species |
Pacific oyster (Magallana gigas) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
|
Node of Origin (locus) |
C. gigas
|
Node of Origin (family) |
C. gigas
|
Genome context (CGI_GCA_000297895.1) |
scaffold960: 301290-301359 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CAGAAUUGCAGCGAGCAACAUUUUUCUGCGAGGCGAGCCUAAACGAUUCCGCUUUUGUUCAAUUUCAAUGUUAAAGUGCCGAUUCGUUAGGGCUUGCCACGUAGGGAGGUGACUUUGAACAAAACAAAGG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CAGAAUUGCAGCGAGCAA-| UU A A U C UUUUGUUCAAUU
CAUUU CUGCG GGCGAGCCU AACGA UC GC \
GUGGA GAUGC CCGUUCGGG UUGCU AG CG U
GGAAACAAAACAAGUUUCA^ GG A A U C UGAAAUUGUAAC
. 120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | No |
Tissue expression
|
A- |
D- |
D- |
F- |
L- |
Ea |
Eg |
Fe |
Gi |
Ha |
He |
Ju |
La |
Ma |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Mature sequence |
Mgi-Novel-1_5p |
mirBase accession | None |
Sequence |
0- AGGCGAGCCUAAACGAUUCCGC -22
Get sequence
|
Star sequence |
Mgi-Novel-1_3p* |
mirBase accession | None |
Sequence |
49- CGAUUCGUUAGGGCUUGCCAC -70
Get sequence
|