MirGeneDB 3.0

MirGeneDB ID

Mgi-Novel-1

Family name MGI-NOVEL-1 (all species)
Seed GGCGAGC
Species Pacific oyster (Magallana gigas)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) C. gigas
Node of Origin (family) C. gigas
Genome context
(CGI_GCA_000297895.1)
scaffold960: 301290-301359 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CAGAAUUGCAGCGAGCAACAUUUUUCUGCGAGGCGAGCCUAAACGAUUCCGCUUUUGUUCAAUUUCAAUGUUAAAGUGCCGAUUCGUUAGGGCUUGCCACGUAGGGAGGUGACUUUGAACAAAACAAAGG
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Structure
        10         20        30        40        50        60     
CAGAAUUGCAGCGAGCAA-|    UU     A         A     U  C  UUUUGUUCAAUU 
                   CAUUU  CUGCG GGCGAGCCU AACGA UC GC            \
                   GUGGA  GAUGC CCGUUCGGG UUGCU AG CG            U
GGAAACAAAACAAGUUUCA^    GG     A         A     U  C  UGAAAUUGUAAC 
.       120       110       100        90        80        70
Deep sequencing
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3' NTU Yes
MotifsNo
Tissue expression
 +
A- D- D- F- L- Ea Eg Fe Gi Ha He Ju La Ma Ma Ma Pe Re Sp Um
Mature sequence

Mgi-Novel-1_5p

mirBase accessionNone
Sequence
0- AGGCGAGCCUAAACGAUUCCGC -22
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Star sequence

Mgi-Novel-1_3p*

mirBase accessionNone
Sequence
49- CGAUUCGUUAGGGCUUGCCAC -70
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