MirGeneDB ID | Mgi-Novel-4 |
Family name |
MGI-NOVEL-4 (all species) |
Seed |
CAUACAA |
Species |
Pacific oyster (Magallana gigas) |
MiRBase ID |
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
C. gigas
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Node of Origin (family) |
C. gigas
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Genome context (CGI_GCA_000297895.1) |
scaffold1742: 63371-63430 [+]
Ensembl
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Precursor (pre-Mir +30nt flank) |
GUUCGAAUCGCUCUGUCCCCAGACAAGCACACAUACAACUCGGUCGUAAGACUGUCUGGUAAUGUUCAGAUACGACUAGGUUGUACGUGUAUUUGUACAAUUAAUCCGAAUGGUCAACCA
Get precursor sequence
|
Structure | 10 20 30 40 50
GUUCGAAUCGCUCUGUCCCCAG--| C A CG AGACUGUCUG
ACAAG ACAC UACAACU GUCGUA G
UGUUU UGUG AUGUUGG CAGCAU U
ACCAACUGGUAAGCCUAAUUAACA^ A C AU AGACUUGUAA
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
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Motifs | No |
Tissue expression
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A- |
D- |
D- |
Eg |
F- |
Gi |
He |
Ju |
L- |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
Ea |
Fe |
Ha |
La |
Ma |
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Mature sequence |
Mgi-Novel-4_5p |
mirBase accession | None |
Sequence |
0- ACAUACAACUCGGUCGUAAGACU -23
Get sequence
|
Co-mature sequence |
Mgi-Novel-4_3p |
mirBase accession | None |
Sequence |
38- GAUACGACUAGGUUGUACGUGU -60
Get sequence
|