MirGeneDB 3.0

MirGeneDB ID

Mgi-Novel-5

Family name MGI-NOVEL-5 (all species)
Seed GCUAUAA
Species Pacific oyster (Magallana gigas)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) C. gigas
Node of Origin (family) C. gigas
Genome context
(CGI_GCA_000297895.1)
scaffold631: 283594-283651 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CAUGGAAGCUGGCUUUAGAGUAAAACUGGCAGCUAUAAUGGUUGUCAUUUGUACGGUAUACAGGUAUAAAUGCAACCAUUAUUGCUACUGGUUUAUUCGUCUUUGACAUCACCUGAAU
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Structure
        10           20        30        40        50         
CAUGGAAGCUGGCUUUA---|      A UG C   U          U        CGGUA 
                    GAGUAAA C  G AGC AUAAUGGUUG CAUUUGUA     \
                    CUUAUUU G  C UCG UAUUACCAAC GUAAAUAU     U
UAAGUCCACUACAGUUUCUG^      - GU A   U          -        GGACA 
      110       100         90        80         70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
A- D- D- F- L- Ea Eg Fe Gi Ha He Ju La Ma Ma Ma Pe Re Sp Um
Mature sequence

Mgi-Novel-5_5p

mirBase accessionNone
Sequence
0- AGCUAUAAUGGUUGUCAUUUGUA -23
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Star sequence

Mgi-Novel-5_3p*

mirBase accessionNone
Sequence
36- UAAAUGCAACCAUUAUUGCUAC -58
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