MirGeneDB ID | Mgi-Novel-7 |
Family name |
MGI-NOVEL-7 (all species) |
Seed |
GGUUAAG |
Species |
Pacific oyster (Magallana gigas) |
MiRBase ID |
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
C. gigas
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Node of Origin (family) |
C. gigas
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Genome context (CGI_GCA_000297895.1) |
scaffold705: 16090-16154 [+]
Ensembl
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Precursor (pre-Mir +30nt flank) |
AUCGACCAAAAAUUCCAGCAUAAAAGCCAGAGGUUAAGAAAUUUAGGAGUCUUUUAGUAAUGAAAUGCUGUAGACUUCAAUUUUCUUUUAUCUCUGGUGAAAAAAUCAACUACCCGGUACUUCCA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AUCGACCAAAAAUUCCAGCAUAAAA-- U-| U A UUUAGUAAU
GCCAGAGGU AAGAAA UU GGAGUCU \
UGGUCUCUA UUCUUU AA CUUCAGA G
ACCUUCAUGGCCCAUCAACUAAAAAAG UU^ U - UGUCGUAAA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
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Comment | There is a second Dicer cut +1 on both arms. |
3' NTU |
No
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Motifs | No |
Tissue expression
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A- |
D- |
D- |
F- |
L- |
Ea |
Eg |
Fe |
Gi |
Ha |
He |
Ju |
La |
Ma |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
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Mature sequence |
Mgi-Novel-7_5p |
mirBase accession | None |
Sequence |
0- AGGUUAAGAAAUUUAGGAGUCU -22
Get sequence
|
Star sequence |
Mgi-Novel-7_3p* |
mirBase accession | None |
Sequence |
43- ACUUCAAUUUUCUUUUAUCUCU -65
Get sequence
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