| MirGeneDB ID | Mun-Mir-12609 |
|---|
| Family name |
MIR-12609 (all species) |
|---|
| Seed |
AUCGCGU |
|---|
| Species |
Microcaecilia (Microcaecilia unicolor) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Xla-Mir-12609-P1
Xla-Mir-12609-P2
Xtr-Mir-12609
|
|---|
| Node of Origin (locus) |
Amphibia
|
|---|
| Node of Origin (family) |
Amphibia
|
|---|
Genome context
(Mun_miRNA_loci) |
Novel-1_NC_044032.1:411974553-411974810: 101-158 [+]
|
|---|
Precursor
(pre-Mir +30nt flank) |
CAAUCUUGCAUCGUUUACUGCUUCACGUUGCAUCGCGUUAACCGGAAGUCUCAUGUUUCACUAUGAGACUUCUGGAUGACACGACGUGAUGUGAUGUGGAAUGCCUCGAGAUACCAUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CAAUCUUGCAUCGUUUA--|UG U UG A C A AUGUU
C C UCACGU C UCG GUUA CCGGAAGUCUC U
G G AGUGUA G AGC CAGU GGUCUUCAGAG C
GUACCAUAGAGCUCCGUAA^GU U GU C A A UAUCA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Mun-Mir-12609_5p |
| mirBase accession | None |
|---|
| Sequence |
0- CAUCGCGUUAACCGGAAGUCUC -22
Get sequence
|
|---|
| Star sequence |
Mun-Mir-12609_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
36- GACUUCUGGAUGACACGACGUG -58
Get sequence
|
|---|
