MirGeneDB 3.0

MirGeneDB ID

Mun-Mir-12609

Family name MIR-12609 (all species)
Seed AUCGCGU
Species Microcaecilia (Microcaecilia unicolor)
MiRBase ID
Paralogues
Orthologues Xla-Mir-12609-P1  Xla-Mir-12609-P2  Xtr-Mir-12609 
Node of Origin (locus) Amphibia
Node of Origin (family) Amphibia
Genome context
(Mun_miRNA_loci)
Novel-1_NC_044032.1:411974553-411974810: 101-158 [+]
Precursor
(pre-Mir +30nt flank)
CAAUCUUGCAUCGUUUACUGCUUCACGUUGCAUCGCGUUAACCGGAAGUCUCAUGUUUCACUAUGAGACUUCUGGAUGACACGACGUGAUGUGAUGUGGAAUGCCUCGAGAUACCAUG
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Structure
        10          20        30        40        50        
CAAUCUUGCAUCGUUUA--|UG U      UG A   C    A           AUGUU 
                   C  C UCACGU  C UCG GUUA CCGGAAGUCUC     U
                   G  G AGUGUA  G AGC CAGU GGUCUUCAGAG     C
GUACCAUAGAGCUCCGUAA^GU U      GU C   A    A           UAUCA 
      110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Mun-Mir-12609_5p

mirBase accessionNone
Sequence
0- CAUCGCGUUAACCGGAAGUCUC -22
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Star sequence

Mun-Mir-12609_3p* (predicted)

mirBase accessionNone
Sequence
36- GACUUCUGGAUGACACGACGUG -58
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