MirGeneDB 3.0

MirGeneDB ID

Xtr-Mir-12609

Family name MIR-12609 (all species)
Seed AUCGCGU
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID
Paralogues
Orthologues Mun-Mir-12609  Xla-Mir-12609-P1  Xla-Mir-12609-P2 
Node of Origin (locus) Amphibia
Node of Origin (family) Amphibia
Genome context
(xenTro9_add)
chr1: 67947782-67947839 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCCAACAUCUUUGAUUACUGCUUCACGUUGCAUCGCGUUAACCGGAAGUCUCAUGUUUCAUUGUGGGACUUCUGGGUGACACGACGUGAUGUGAUGUGGCAUCCAUCGAGAAUAGGGA
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Structure
        10          20        30        40        50        
GCCAACAUCUUUGAUUA--|UG U      UG A   C    A           AUGUU 
                   C  C UCACGU  C UCG GUUA CCGGAAGUCUC     U
                   G  G AGUGUA  G AGC CAGU GGUCUUCAGGG     C
AGGGAUAAGAGCUACCUAC^GU U      GU C   A    G           UGUUA 
      110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-12609_5p

mirBase accessionNone
Sequence
0- CAUCGCGUUAACCGGAAGUCUC -22
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Star sequence

Xtr-Mir-12609_3p*

mirBase accessionNone
Sequence
36- GACUUCUGGGUGACACGACGUG -58
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