MirGeneDB ID | Npo-Mir-133-P20 |
---|---|
Family name | MIR-133 (all species) |
Seed | UGGUCCC |
Species | Chambered Nautilus (Nautilus pompilius) |
MiRBase ID | |
Paralogues | Npo-Mir-133-P21 |
Orthologues | Aae-Mir-133 Aga-Mir-133 Asu-Mir-133 Bge-Mir-133 Cbr-Mir-133 Cel-Mir-133 Cin-Mir-133 Cte-Mir-133 Dan-Mir-133 Dgr-Mir-133 Dlo-Mir-133 Dma-Mir-133 Dme-Mir-133 Dmo-Mir-133 Dpu-Mir-133 Dsi-Mir-133 Dya-Mir-133 Eba-Mir-133 Efe-Mir-133 Egr-Mir-133 Esc-Mir-133 Gpa-Mir-133 Gsp-Mir-133 Hme-Mir-133 Hru-Mir-133 Isc-Mir-133 Lan-Mir-133 Lgi-Mir-133 Lhy-Mir-133 Llo-Mir-133 Mgi-Mir-133 Mom-Mir-133 Obi-Mir-133 Ofu-Mir-133 Ovu-Mir-133 Pau-Mir-133 Pca-Mir-133 Pcr-Mir-133 Pdu-Mir-133 Pve-Mir-133 Rph-Mir-133 Sma-Mir-133 Snu-Mir-133 Spu-Mir-133 Tca-Mir-133 Tur-Mir-133 War-Mir-133 Xbo-Mir-133 |
Node of Origin (locus) | N. pompilius |
Node of Origin (family) | Bilateria |
Genome context (GCA_018389105_NPO) |
JACATO010002176.1: 796507-796570 [-] Ensembl |
Precursor (pre-Mir +30nt flank) | CCAACAAUCAAAGUGAGGCUGCUACUCUGUAGCUGGUUGAAAUCGGGCCAAAUUGUAUAAAACCAAAGGCAUUUGGUCCCCUUCAACCAGCUGUAGUUAGCAUUCCUUCCAACAGAGGGCUCUCGet precursor sequence |
Structure | 10 20 30 40 50 60 CCAACAAUCAAAGUGAGGC---| CU AUC UGUAUAAA UGCUA CUGUAGCUGGUUGAA GGGCCAAAU \ ACGAU GAUGUCGACCAACUU CCUGGUUUA A CUCUCGGGAGACAACCUUCCUU^ U- CC- CGGAAACC 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17), UGUG in loop |
Star sequence | Npo-Mir-133-P20_5p* (predicted) |
mirBase accession | None |
Sequence |
0- AGCUGGUUGAAAUCGGGCCAAAU -23
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|
Mature sequence | Npo-Mir-133-P20_3p (predicted) |
mirBase accession | None |
Sequence |
42- UUGGUCCCCUUCAACCAGCUGU -64
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|