MirGeneDB 3.0

MirGeneDB ID

Npo-Mir-133-P20

Family name MIR-133 (all species)
Seed UGGUCCC
Species Chambered Nautilus (Nautilus pompilius)
MiRBase ID
Paralogues Npo-Mir-133-P21 
Orthologues Aae-Mir-133  Aga-Mir-133  Asu-Mir-133  Bge-Mir-133  Cbr-Mir-133  Cel-Mir-133  Cin-Mir-133  Cte-Mir-133  Dan-Mir-133  Dgr-Mir-133  Dlo-Mir-133  Dma-Mir-133  Dme-Mir-133  Dmo-Mir-133  Dpu-Mir-133  Dsi-Mir-133  Dya-Mir-133  Eba-Mir-133  Efe-Mir-133  Egr-Mir-133  Esc-Mir-133  Gpa-Mir-133  Gsp-Mir-133  Hme-Mir-133  Hru-Mir-133  Isc-Mir-133  Lan-Mir-133  Lgi-Mir-133  Lhy-Mir-133  Llo-Mir-133  Mgi-Mir-133  Mom-Mir-133  Obi-Mir-133  Ofu-Mir-133  Ovu-Mir-133  Pau-Mir-133  Pca-Mir-133  Pcr-Mir-133  Pdu-Mir-133  Pve-Mir-133  Rph-Mir-133  Sma-Mir-133  Snu-Mir-133  Spu-Mir-133  Tca-Mir-133  Tur-Mir-133  War-Mir-133  Xbo-Mir-133 
Node of Origin (locus) N. pompilius
Node of Origin (family) Bilateria
Genome context
(GCA_018389105_NPO)
JACATO010002176.1: 796507-796570 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CCAACAAUCAAAGUGAGGCUGCUACUCUGUAGCUGGUUGAAAUCGGGCCAAAUUGUAUAAAACCAAAGGCAUUUGGUCCCCUUCAACCAGCUGUAGUUAGCAUUCCUUCCAACAGAGGGCUCUC
Get precursor sequence
Structure
        10           20        30        40        50        60  
CCAACAAUCAAAGUGAGGC---|    CU               AUC         UGUAUAAA 
                      UGCUA  CUGUAGCUGGUUGAA   GGGCCAAAU        \
                      ACGAU  GAUGUCGACCAACUU   CCUGGUUUA        A
CUCUCGGGAGACAACCUUCCUU^    U-               CC-         CGGAAACC 
  120       110       100         90        80         70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Star sequence

Npo-Mir-133-P20_5p* (predicted)

mirBase accessionNone
Sequence
0- AGCUGGUUGAAAUCGGGCCAAAU -23
Get sequence
Mature sequence

Npo-Mir-133-P20_3p (predicted)

mirBase accessionNone
Sequence
42- UUGGUCCCCUUCAACCAGCUGU -64
Get sequence