| MirGeneDB ID | Obi-Mir-12541 |
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| Family name |
MIR-12541 (all species) |
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| Seed |
UCGGCUC |
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| Species |
California two-spot octopus (Octopus bimaculoides) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Esc-Mir-12541
Ovu-Mir-12541
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| Node of Origin (locus) |
Coleoidea
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| Node of Origin (family) |
Coleoidea
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Genome context
(PRJNA270931_OBI) |
KQ416694: 2355562-2355625 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AGUAGGAAUGGUAAGAUAUUAAAUAUGAUGAAGAAUCACCUUAAGCUGUGGUCGUAUUUCCACGAGUGCUCGAUCGGCUCAAGGCAGUUCUUCGACACAUUUAAUAUUAGUCAACAUGUGUAUC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
AGUAGGAAUGGUAAGAU--| A A CA A GU GUAUUUCC
AUUAAAU UG UGAAGAAU CCUU AGCU GGUC A
UAAUUUA AC GCUUCUUG GGAA UCGG CUAG C
CUAUGUGUACAACUGAUUA^ C A AC C -- CUCGUGAG
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | Despite being templated, this sequence might be monoadenylated at its very 3' end. |
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Star sequence |
Obi-Mir-12541_5p* |
| mirBase accession | None |
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| Sequence |
0- AAGAAUCACCUUAAGCUGUGGUC -23
Get sequence
|
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| Mature sequence |
Obi-Mir-12541_3p |
| mirBase accession | None |
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| Sequence |
42- AUCGGCUCAAGGCAGUUCUUCG -64
Get sequence
|
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