| MirGeneDB ID | Obi-Mir-12543 |
|---|
| Family name |
MIR-12543 (all species) |
|---|
| Seed |
ACCAAAG |
|---|
| Species |
California two-spot octopus (Octopus bimaculoides) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Esc-Mir-12543
Ovu-Mir-12543
|
|---|
| Node of Origin (locus) |
Coleoidea
|
|---|
| Node of Origin (family) |
Coleoidea
|
|---|
Genome context
(PRJNA270931_OBI) |
KQ423250: 221872-221930 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GAAGGAGCGGUCUGUUUCAGCUUGGGGUUUUCUCCAACUAGUUUUCGGUACCUUGUGUUUCAUUAUGGUACCAAAGAUGAUUGGAGAGAUCCCCCACAGUUGACUUAUCAUCGAUUACU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GAAGGAGCGGUCUGUUUC - U-| CUA C UUGUGU
AGCU UGGGG UUUCUCCAA GUUUU GGUACC U
UUGA ACCCC AGAGAGGUU UAGAA CCAUGG U
UCAUUAGCUACUAUUCAG C CU^ AG- A UAUUAC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Dicer cut +1 on both arms. This second cut on the 5p arm corresponds to the mature read in O. Vulgaris. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Obi-Mir-12543_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UCUCCAACUAGUUUUCGGUACC -22
Get sequence
|
|---|
| Mature sequence |
Obi-Mir-12543_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UACCAAAGAUGAUUGGAGAGA -59
Get sequence
|
|---|
