| MirGeneDB ID | Obi-Mir-12548 |
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| Family name |
MIR-12548 (all species) |
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| Seed |
CCCUGCC |
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| Species |
California two-spot octopus (Octopus bimaculoides) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Esc-Mir-12548
Ovu-Mir-12548
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| Node of Origin (locus) |
Coleoidea
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| Node of Origin (family) |
Coleoidea
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Genome context
(PRJNA270931_OBI) |
KQ426637: 81579-81638 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GUCACGUGCAAAAGUCUGCCUUUUCACUGGUCCCUGCCUCACUCUAGUUACAUGUACACUCUGCAAUGUAGCUGGCUGAGACAAGAGACCAGGCGUGGCCCUAAUCACGCUCUUUGUUCG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GUCACGUGCAAAAGUCU----| UUUUCA C GC- CU GUACA
GCC CUGGUC CU CUCA CUAGUUACAU C
CGG GACCAG GA GAGU GGUCGAUGUA U
GCUUGUUUCUCGCACUAAUCC^ UGCG-- A ACA C- ACGUC
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Dicer cut -1 on both arms |
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14) |
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Tissue expression
|
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| Mature sequence |
Obi-Mir-12548_5p |
| mirBase accession | None |
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| Sequence |
0- UCCCUGCCUCACUCUAGUUACAU -23
Get sequence
|
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| Co-mature sequence |
Obi-Mir-12548_3p |
| mirBase accession | None |
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| Sequence |
37- GUAGCUGGCUGAGACAAGAGACC -60
Get sequence
|
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