| MirGeneDB ID | Ovu-Mir-12548 |
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| Family name |
MIR-12548 (all species) |
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| Seed |
CCCUGCC |
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| Species |
Common octopus (Octopus vulgaris) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Esc-Mir-12548
Obi-Mir-12548
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| Node of Origin (locus) |
Coleoidea
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| Node of Origin (family) |
Coleoidea
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Genome context
(GCA_003957725.1_ASM395772v1_OVU) |
RXHP01066201.1: 65212-65271 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GUCACGUGCAAAAGUGUGCCUUUUCACUGGUCCCUGCCUCACUCUAGUUACAUGUACACUCUGCAAUGUAGCUGGCUGAGACAAGAGACCAGGCGUGGCCCUAAUCACACUCUUUGUUCG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GUCACGUGCAAAAGUGU----| UUUUCA C GC- CU GUACA
GCC CUGGUC CU CUCA CUAGUUACAU C
CGG GACCAG GA GAGU GGUCGAUGUA U
GCUUGUUUCUCACACUAAUCC^ UGCG-- A ACA C- ACGUC
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| Comment | There is a second Dicer cut -1 on both arms. |
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| 3' NTU |
No
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| Motifs | UG at 5p(-14) |
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Tissue expression
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| Ax |
Ce |
Fr |
He |
In |
Op |
Op |
Pe |
Po |
Re |
Sk |
St |
Su |
Su |
Te |
Ve |
Vi |
Wh |
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| Mature sequence |
Ovu-Mir-12548_5p |
| mirBase accession | None |
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| Sequence |
0- UCCCUGCCUCACUCUAGUUACAU -23
Get sequence
|
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| Star sequence |
Ovu-Mir-12548_3p* |
| mirBase accession | None |
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| Sequence |
38- UAGCUGGCUGAGACAAGAGACC -60
Get sequence
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