| MirGeneDB ID | Obi-Mir-12554 |
|---|
| Family name |
MIR-12554 (all species) |
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| Seed |
AAACUCA |
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| Species |
California two-spot octopus (Octopus bimaculoides) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Ovu-Mir-12554
|
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| Node of Origin (locus) |
Octopus
|
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| Node of Origin (family) |
Octopus
|
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Genome context
(PRJNA270931_OBI) |
KQ419924: 283995-284054 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UAAUGAUGGAGAACUUUUUUUUUGGUUAGUAGUUUUCUUCUCUCAGUUUAUCUGUAAGAUUUAUACCACAAACUCAGAGAAGAGAUCUGCCAACUAAAAAGCAAAGCAACAUGGUUCUCC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UAAUGAUGGAGAACUUU--| A U C AUCUGUAAG
UUUUUUGGUU GUAG UUUCUUCUCU AGUUU A
GAAAAAUCAA CGUC AGAGAAGAGA UCAAA U
CCUCUUGGUACAACGAAAC^ C U C CACCAUAUU
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Obi-Mir-12554_5p* |
| mirBase accession | None |
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| Sequence |
0- AGUUUUCUUCUCUCAGUUUAUC -22
Get sequence
|
|---|
| Mature sequence |
Obi-Mir-12554_3p |
| mirBase accession | None |
|---|
| Sequence |
38- CAAACUCAGAGAAGAGAUCUGC -60
Get sequence
|
|---|
