| MirGeneDB ID | Ovu-Mir-12554 |
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| Family name |
MIR-12554 (all species) |
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| Seed |
AAACUCA |
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| Species |
Common octopus (Octopus vulgaris) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Obi-Mir-12554
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| Node of Origin (locus) |
Octopus
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| Node of Origin (family) |
Octopus
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Genome context
(GCA_003957725.1_ASM395772v1_OVU) |
RXHP01067042.1: 220147-220206 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UGAUGACGGAGAACUCUUUUUUUGGUUAGUAGUUUUCUUCUCUCAGUUUAUCUGUAAGAUUUAUACCACAAACUCAGAGAAGAGAUCUGCCAACUGAAAAACAAAGCAACAUGGUUCUCC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UGAUGACGGAGAACUCU--| UG A U C AUCUGUAAG
UUUUU GUU GUAG UUUCUUCUCU AGUUU A
AAAAA CAA CGUC AGAGAAGAGA UCAAA U
CCUCUUGGUACAACGAAAC^ GU C U C CACCAUAUU
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Ax |
Ce |
Fr |
He |
In |
Op |
Op |
Pe |
Po |
Re |
Sk |
St |
Su |
Su |
Te |
Ve |
Vi |
Wh |
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| Star sequence |
Ovu-Mir-12554_5p* |
| mirBase accession | None |
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| Sequence |
0- AGUUUUCUUCUCUCAGUUUAUC -22
Get sequence
|
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| Mature sequence |
Ovu-Mir-12554_3p |
| mirBase accession | None |
|---|
| Sequence |
38- CAAACUCAGAGAAGAGAUCUGC -60
Get sequence
|
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