MirGeneDB 3.0

MirGeneDB ID

Obi-Mir-12558

Family name MIR-12558 (all species)
Seed GAAUCUU
Species California two-spot octopus (Octopus bimaculoides)
MiRBase ID
Paralogues
Orthologues Ovu-Mir-12558 
Node of Origin (locus) Octopus
Node of Origin (family) Octopus
Genome context
(PRJNA270931_OBI)
KQ417665: 580497-580558 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UUUUUGCUCAAUCAAAUGAUUGUUUCAUUUCCGGGGCCCUUAAUGCUUCGUAAAGAAGCUUUGCGUUCUACGAAUCUUAAGAGACCCCAGGAAUGAGAUUUCUUAAAUGCAGCUACAUAGAU
Get precursor sequence
Structure
        10           20        30         40        50        60
UUUUUGCUCAAUCAAAU---| UU          C    CC-     UGC      AAGAAGC 
                    GA  GUUUCAUUUC GGGG   CUUAA   UUCGUA       U
                    CU  UAGAGUAAGG CCCC   GAAUU   AAGCAU       U
UAGAUACAUCGACGUAAAUU^ U-          A    AGA     CU-      CUUGCGU 
120       110       100         90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Obi-Mir-12558_5p* (predicted)

mirBase accessionNone
Sequence
0- CCGGGGCCCUUAAUGCUUCGUA -22
Get sequence
Mature sequence

Obi-Mir-12558_3p

mirBase accessionNone
Sequence
40- CGAAUCUUAAGAGACCCCAGGA -62
Get sequence