| MirGeneDB ID | Obi-Mir-12558 |
|---|
| Family name |
MIR-12558 (all species) |
|---|
| Seed |
GAAUCUU |
|---|
| Species |
California two-spot octopus (Octopus bimaculoides) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Ovu-Mir-12558
|
|---|
| Node of Origin (locus) |
Octopus
|
|---|
| Node of Origin (family) |
Octopus
|
|---|
Genome context
(PRJNA270931_OBI) |
KQ417665: 580497-580558 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UUUUUGCUCAAUCAAAUGAUUGUUUCAUUUCCGGGGCCCUUAAUGCUUCGUAAAGAAGCUUUGCGUUCUACGAAUCUUAAGAGACCCCAGGAAUGAGAUUUCUUAAAUGCAGCUACAUAGAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UUUUUGCUCAAUCAAAU---| UU C CC- UGC AAGAAGC
GA GUUUCAUUUC GGGG CUUAA UUCGUA U
CU UAGAGUAAGG CCCC GAAUU AAGCAU U
UAGAUACAUCGACGUAAAUU^ U- A AGA CU- CUUGCGU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Obi-Mir-12558_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- CCGGGGCCCUUAAUGCUUCGUA -22
Get sequence
|
|---|
| Mature sequence |
Obi-Mir-12558_3p |
| mirBase accession | None |
|---|
| Sequence |
40- CGAAUCUUAAGAGACCCCAGGA -62
Get sequence
|
|---|
