| MirGeneDB ID | Ovu-Mir-12558 |
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| Family name |
MIR-12558 (all species) |
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| Seed |
CGGGGCC |
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| Species |
Common octopus (Octopus vulgaris) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Obi-Mir-12558
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| Node of Origin (locus) |
Octopus
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| Node of Origin (family) |
Octopus
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Genome context
(GCA_003957725.1_ASM395772v1_OVU) |
RXHP01057409.1: 265525-265586 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UUUUAUCUCAAUCAAAUGAUUGUUUCAUUUCCGGGGCCCUUAAUGCUUCGUAAAGAAGCUUUGCGUUCUACGAAUCUUAAGAGACCCCAGGAAUGAGAUUUCUUAAAUGCAGCUAUAUAGAU
Get precursor sequence
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| Structure | 10 20 30 40 50 60
UUUUAUCUCAAUCAAAU---| UU C CC- UGC AAGAAGC
GA GUUUCAUUUC GGGG CUUAA UUCGUA U
CU UAGAGUAAGG CCCC GAAUU AAGCAU U
UAGAUAUAUCGACGUAAAUU^ U- A AGA CU- CUUGCGU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| Comment | The 3' end of the 5p arm may be mono-uridylated. |
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| 3' NTU |
No
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Ax |
Ce |
Fr |
He |
In |
Op |
Op |
Pe |
Po |
Re |
Sk |
St |
Su |
Su |
Te |
Ve |
Vi |
Wh |
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| Mature sequence |
Ovu-Mir-12558_5p |
| mirBase accession | None |
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| Sequence |
0- CCGGGGCCCUUAAUGCUUCGUA -22
Get sequence
|
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| Co-mature sequence |
Ovu-Mir-12558_3p |
| mirBase accession | None |
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| Sequence |
40- CGAAUCUUAAGAGACCCCAGGA -62
Get sequence
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