MirGeneDB 3.0

MirGeneDB ID

Obi-Mir-12570

Family name MIR-12570 (all species)
Seed UAUAAUU
Species California two-spot octopus (Octopus bimaculoides)
MiRBase ID
Paralogues
Orthologues Ovu-Mir-12570 
Node of Origin (locus) Octopus
Node of Origin (family) Octopus
Genome context
(PRJNA270931_OBI)
KQ415671: 60207-60265 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GGUGUCCUUAACAACAUGGCCGUUAUUAUUCUAAGUACCUAGUUUUGUAAUGUGUACACUUCUGGCAUUAUAAUUCUACGUACCUGGGGUUAUAACGAUGUCUACUAACAUUCUCUAUU
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Structure
        10        20          30        40        50         
GGUGUCCUUAACAACAUGGC--|     U      A    C   UU        UGUACA 
                      CGUUAU AUUCUA GUAC UAG  UUGUAAUG      \
                      GCAAUA UGGGGU CAUG AUC  AAUAUUAC      C
UUAUCUCUUACAAUCAUCUGUA^     U      C    C   UU        GGUCUU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
 +
To
Star sequence

Obi-Mir-12570_5p*

mirBase accessionNone
Sequence
0- CUAAGUACCUAGUUUUGUAAUG -22
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Mature sequence

Obi-Mir-12570_3p

mirBase accessionNone
Sequence
37- UUAUAAUUCUACGUACCUGGGG -59
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