MirGeneDB ID | Obi-Mir-12570 |
Family name |
MIR-12570 (all species) |
Seed |
UAUAAUU |
Species |
California two-spot octopus (Octopus bimaculoides) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Ovu-Mir-12570
|
Node of Origin (locus) |
Octopus
|
Node of Origin (family) |
Octopus
|
Genome context (PRJNA270931_OBI) |
KQ415671: 60207-60265 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGUGUCCUUAACAACAUGGCCGUUAUUAUUCUAAGUACCUAGUUUUGUAAUGUGUACACUUCUGGCAUUAUAAUUCUACGUACCUGGGGUUAUAACGAUGUCUACUAACAUUCUCUAUU
Get precursor sequence
|
Structure | 10 20 30 40 50
GGUGUCCUUAACAACAUGGC--| U A C UU UGUACA
CGUUAU AUUCUA GUAC UAG UUGUAAUG \
GCAAUA UGGGGU CAUG AUC AAUAUUAC C
UUAUCUCUUACAAUCAUCUGUA^ U C C UU GGUCUU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), UGUG in loop |
Tissue expression
|
|
Star sequence |
Obi-Mir-12570_5p* |
mirBase accession | None |
Sequence |
0- CUAAGUACCUAGUUUUGUAAUG -22
Get sequence
|
Mature sequence |
Obi-Mir-12570_3p |
mirBase accession | None |
Sequence |
37- UUAUAAUUCUACGUACCUGGGG -59
Get sequence
|