| MirGeneDB ID | Ovu-Mir-12570 |
|---|
| Family name |
MIR-12570 (all species) |
|---|
| Seed |
UAUAAUU |
|---|
| Species |
Common octopus (Octopus vulgaris) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Obi-Mir-12570
|
|---|
| Node of Origin (locus) |
Octopus
|
|---|
| Node of Origin (family) |
Octopus
|
|---|
Genome context
(GCA_003957725.1_ASM395772v1_OVU) |
RXHP01034389.1: 31746-31806 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UGGUGUCCUUAACAACAUGGCCGUUAUUAUUCUAAGUACCUAGUUUUGUAAUGUGUACACUUCUGGCAUUAUAAUUCUACGUACCUGGGGUUAUAAUGAUGUCUACUAACAUUCUCUAUUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGGUGUCCUUAACAACAU --| U A C UU UGUACA
GGC CGUUAU AUUCUA GUAC UAG UUGUAAUG \
CUG GUAAUA UGGGGU CAUG AUC AAUAUUAC C
CUUAUCUCUUACAAUCAU UA^ U C C UU GGUCUU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Drosha cut +1 on both arm. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | UGUG in loop |
|---|
Tissue expression
|
| Ax |
Ce |
Fr |
He |
In |
Op |
Op |
Pe |
Po |
Re |
Sk |
St |
Su |
Su |
Te |
Ve |
Vi |
Wh |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Ovu-Mir-12570_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UCUAAGUACCUAGUUUUGUAAUG -23
Get sequence
|
|---|
| Mature sequence |
Ovu-Mir-12570_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UUAUAAUUCUACGUACCUGGGGU -61
Get sequence
|
|---|
