| MirGeneDB ID | Ovu-Mir-12551 |
|---|
| Family name |
MIR-12551 (all species) |
|---|
| Seed |
GCUAGCA |
|---|
| Species |
Common octopus (Octopus vulgaris) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Esc-Mir-12551
Obi-Mir-12551
|
|---|
| Node of Origin (locus) |
Coleoidea
|
|---|
| Node of Origin (family) |
Coleoidea
|
|---|
Genome context
(GCA_003957725.1_ASM395772v1_OVU) |
RXHP01012669.1: 587069-587125 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AGUUAUUGGCACUCCAGAGGCGCGCUGGUCUGCUAGCAAUCUAUCGUGGUUAUGUCAUGUCCGCCACCACGCUGGUAUGCUAACAGUCUAUCGUGGCUACUACUCAGCCUGUGUACU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGUUAUUGGCACUCCAG--| G C U C AU U UAUGUCA
AG CGCG UGG CUG UAGCA CUA CGUGGU \
UC GUGC AUC GAC AUCGU GGU GCACCA U
UCAUGUGUCCGACUCAUCA^ G U U A AU C CCGCCUG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Drosha cut -2 on the 5p arm. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
| Ax |
Ce |
Fr |
He |
In |
Op |
Op |
Pe |
Po |
Re |
Sk |
St |
Su |
Su |
Te |
Ve |
Vi |
Wh |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Ovu-Mir-12551_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGCUAGCAAUCUAUCGUGGUUA -22
Get sequence
|
|---|
| Star sequence |
Ovu-Mir-12551_3p* |
| mirBase accession | None |
|---|
| Sequence |
35- ACCACGCUGGUAUGCUAACAGU -57
Get sequence
|
|---|
