MirGeneDB ID | Pab-Mir-1252 |
Family name |
MIR-1252 (all species) |
Seed |
GAAGGAA |
Species |
Sumatran orangutan (Pongo abelii) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Hsa-Mir-1252
Mml-Mir-1252
|
Node of Origin (locus) |
Catarrhini
|
Node of Origin (family) |
Catarrhini
|
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054689.2: 77628170-77628228 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GUAAGUUGACAAAAAAUGUGAGGUGUAGAAAGAAGGAAGUUGAAUUCAUUUAGAAAAGAGAAUUCCAAAUGAGCUUAAUUUCUUUUUUUCUAAAUCUUAAUAAUCUACCUUGCUUUUCU
Get precursor sequence
|
Structure | 10 20 30 40 50
GUAAGUUGACAAAAAAUG--| G A AGAAAAG
UGAGGU UAGAAAGAAGGAAGUUGA UUCAUUU \
AUUCUA AUCUUUUUUUCUUUAAUU GAGUAAA A
UCUUUUCGUUCCAUCUAAUA^ A C CCUUAAG
110 100 90 80 70 60 |
Deep sequencing |
|
3' NTU |
Unknown
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Pab-Mir-1252_5p (predicted) |
mirBase accession | None |
Sequence |
0- AGAAGGAAGUUGAAUUCAUUUA -22
Get sequence
|
Star sequence |
Pab-Mir-1252_3p* (predicted) |
mirBase accession | None |
Sequence |
37- AAUGAGCUUAAUUUCUUUUUUU -59
Get sequence
|