MirGeneDB 3.0

MirGeneDB ID

Pab-Mir-1252

Family name MIR-1252 (all species)
Seed GAAGGAA
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues
Orthologues Hsa-Mir-1252  Mml-Mir-1252 
Node of Origin (locus) Catarrhini
Node of Origin (family) Catarrhini
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)
CM054689.2: 77628170-77628228 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUAAGUUGACAAAAAAUGUGAGGUGUAGAAAGAAGGAAGUUGAAUUCAUUUAGAAAAGAGAAUUCCAAAUGAGCUUAAUUUCUUUUUUUCUAAAUCUUAAUAAUCUACCUUGCUUUUCU
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Structure
        10          20        30        40        50         
GUAAGUUGACAAAAAAUG--|     G                  A       AGAAAAG 
                    UGAGGU UAGAAAGAAGGAAGUUGA UUCAUUU       \
                    AUUCUA AUCUUUUUUUCUUUAAUU GAGUAAA       A
UCUUUUCGUUCCAUCUAAUA^     A                  C       CCUUAAG 
       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Br Br Li Li
Mature sequence

Pab-Mir-1252_5p (predicted)

mirBase accessionNone
Sequence
0- AGAAGGAAGUUGAAUUCAUUUA -22
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Star sequence

Pab-Mir-1252_3p* (predicted)

mirBase accessionNone
Sequence
37- AAUGAGCUUAAUUUCUUUUUUU -59
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