| MirGeneDB ID | Pab-Mir-3144 |
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| Family name |
MIR-3144 (all species) |
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| Seed |
AGGGGAC |
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| Species |
Sumatran orangutan (Pongo abelii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Hsa-Mir-3144-v1
Hsa-Mir-3144-v2
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| Node of Origin (locus) |
Catarrhini
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| Node of Origin (family) |
Catarrhini
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Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054684.2: 121332561-121332619 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CAGGUAAACAUCAGACUGAAACUACACUUUAAGGGGACCAAAGAGAUACAUAGAUAUCAGAUACCUAUAUACCUGUUUGGUCUCUUUAAAGUGUAGUUUAACUGAUUUUUUAAUGGAUA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CAGGUAAACAUCAGACUG--| G A C GAUAUC
AAACUACACUUUAAGGGGACCAAA AG UA AUA \
UUUGAUGUGAAAUUUCUCUGGUUU UC AU UAU A
AUAGGUAAUUUUUUAGUCAA^ G C A CCAUAG
110 100 90 80 70 60 |
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| Deep sequencing |
|
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| Comment | Although absent in M. mulatta this locus is present in other old world monkeys. |
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| 3' NTU |
Unknown
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| Motifs | UG at 5p(-14) |
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Tissue expression
|
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| Mature sequence |
Pab-Mir-3144_5p (predicted) |
| mirBase accession | None |
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| Sequence |
0- AAGGGGACCAAAGAGAUACAUA -22
Get sequence
|
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| Star sequence |
Pab-Mir-3144_3p* (predicted) |
| mirBase accession | None |
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| Sequence |
37- UAUACCUGUUUGGUCUCUUUAA -59
Get sequence
|
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