| MirGeneDB ID | Pab-Mir-3144 |
|---|---|
| Family name | MIR-3144 (all species) |
| Seed | AGGGGAC |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Hsa-Mir-3144-v1 Hsa-Mir-3144-v2 |
| Node of Origin (locus) | Catarrhini |
| Node of Origin (family) | Catarrhini |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054684.2: 121332561-121332619 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CAGGUAAACAUCAGACUGAAACUACACUUUAAGGGGACCAAAGAGAUACAUAGAUAUCAGAUACCUAUAUACCUGUUUGGUCUCUUUAAAGUGUAGUUUAACUGAUUUUUUAAUGGAUAGet precursor sequence |
| Structure | 10 20 30 40 50 CAGGUAAACAUCAGACUG--| G A C GAUAUC AAACUACACUUUAAGGGGACCAAA AG UA AUA \ UUUGAUGUGAAAUUUCUCUGGUUU UC AU UAU A AUAGGUAAUUUUUUAGUCAA^ G C A CCAUAG 110 100 90 80 70 60 |
| Deep sequencing | |
| Comment | Although absent in M. mulatta this locus is present in other old world monkeys. |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14) |
| Mature sequence | Pab-Mir-3144_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- AAGGGGACCAAAGAGAUACAUA -22
Get sequence
|
| Star sequence | Pab-Mir-3144_3p* (predicted) |
| mirBase accession | None |
| Sequence |
37- UAUACCUGUUUGGUCUCUUUAA -59
Get sequence
|
