MirGeneDB 3.0

MirGeneDB ID

Pab-Mir-3617

Family name MIR-3617 (all species)
Seed AAGACAU
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues
Orthologues Hsa-Mir-3617  Mml-Mir-3617 
Node of Origin (locus) Catarrhini
Node of Origin (family) Catarrhini
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)
CM054700.2: 49985320-49985382 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGAGGGAAUUGUCUUACUCAAGGUCAUAGAAAGACAUAGUUGCAAGAUGGGAUUAGAAACCAUAUGUCUCAUCAGCACCCUAUGUGCUUUCUCUGCCCUGGGAGCACACUCCAUUUAGCAGG
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Structure
        10         20         30         40         50        60
AAGAGGGAAUUGUCUUA-   A-   U  U      -      U-|  AA      AUUAGAA 
                  CUC  AGG CA AGAAAG ACAUAG  UGC  GAUGGG       A
                  GAG  UCC GU UCUUUC UGUAUC  ACG  CUACUC       C
GGACGAUUUACCUCACAC   GG   C  C      G      CC^  A-      UGUAUAC 
 120       110       100        90        80         70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Br Li Li
Mature sequence

Pab-Mir-3617_5p (predicted)

mirBase accessionNone
Sequence
0- AAAGACAUAGUUGCAAGAUGGG -22
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Star sequence

Pab-Mir-3617_3p* (predicted)

mirBase accessionNone
Sequence
40- CAUCAGCACCCUAUGUGCUUUCU -63
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