| MirGeneDB ID | Pab-Mir-5586 |
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| Family name |
MIR-5586 (all species) |
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| Seed |
UAUCCAG |
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| Species |
Sumatran orangutan (Pongo abelii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Cja-Mir-5586
Hsa-Mir-5586
Mml-Mir-5586
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| Node of Origin (locus) |
Simiiformes
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| Node of Origin (family) |
Simiiformes
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Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054694.2: 63727401-63727460 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GAAGACAGCAUACCAUUGGGCCAUGCUUCUUUAUCCAGCUUGCCACUAUAUGCUUUUUAAAUGGGGCACAGAGUGACAAGCUGGAUAAAGAAGCAAGACCCCUUCAAGAUUAUUAUUGAU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GAAGACAGCAUACCAUU--| CCA C AUA CUUUUU
GGG UGCUUCUUUAUCCAGCUUG CACU UG A
CCC ACGAAGAAAUAGGUCGAAC GUGA AC A
UAGUUAUUAUUAGAACUUC^ AGA A GAC GGGGUA
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
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| Motifs | UG at 5p(-14) |
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Tissue expression
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| Mature sequence |
Pab-Mir-5586_5p |
| mirBase accession | None |
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| Sequence |
0- UUAUCCAGCUUGCCACUAUAUG -22
Get sequence
|
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| Star sequence |
Pab-Mir-5586_3p* |
| mirBase accession | None |
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| Sequence |
38- CAGAGUGACAAGCUGGAUAAAG -60
Get sequence
|
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