MirGeneDB ID | Pab-Mir-5586 |
---|---|
Family name | MIR-5586 (all species) |
Seed | UAUCCAG |
Species | Sumatran orangutan (Pongo abelii) |
MiRBase ID | |
Paralogues | |
Orthologues | Cja-Mir-5586 Hsa-Mir-5586 Mml-Mir-5586 |
Node of Origin (locus) | Simiiformes |
Node of Origin (family) | Simiiformes |
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054694.2: 63727401-63727460 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | GAAGACAGCAUACCAUUGGGCCAUGCUUCUUUAUCCAGCUUGCCACUAUAUGCUUUUUAAAUGGGGCACAGAGUGACAAGCUGGAUAAAGAAGCAAGACCCCUUCAAGAUUAUUAUUGAUGet precursor sequence |
Structure | 10 20 30 40 50 GAAGACAGCAUACCAUU--| CCA C AUA CUUUUU GGG UGCUUCUUUAUCCAGCUUG CACU UG A CCC ACGAAGAAAUAGGUCGAAC GUGA AC A UAGUUAUUAUUAGAACUUC^ AGA A GAC GGGGUA . 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | UG at 5p(-14) |
Mature sequence | Pab-Mir-5586_5p |
mirBase accession | None |
Sequence |
0- UUAUCCAGCUUGCCACUAUAUG -22
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|
Star sequence | Pab-Mir-5586_3p* |
mirBase accession | None |
Sequence |
38- CAGAGUGACAAGCUGGAUAAAG -60
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|