| MirGeneDB ID | Pab-Mir-577 |
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| Family name |
MIR-577 (all species) |
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| Seed |
UAGAUAA |
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| Species |
Sumatran orangutan (Pongo abelii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Cja-Mir-577
Hsa-Mir-577
Mml-Mir-577
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| Node of Origin (locus) |
Simiiformes
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| Node of Origin (family) |
Simiiformes
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Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054682.2: 136456920-136456978 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CAAGGCAGGCUGUAUUUGGGGGAGUGAAGAGUAGAUAAAAUAUUGGUACCUGAUGAAUCUGAGGCCAGGUUUCAAUACUUUAUCUGCUCUUCAUUUCCCCAUAUCUACUUACUGUAGGU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CAAGGCAGGCUGUAUUU--| A U AUGAAU
GGGGGAGUGAAGAGUAGAUAAA UAUUGG ACCUG \
CCCCUUUACUUCUCGUCUAUUU AUAACU UGGAC C
UGGAUGUCAUUCAUCUAUA^ C U CGGAGU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Pab-Mir-577_5p |
| mirBase accession | None |
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| Sequence |
0- GUAGAUAAAAUAUUGGUACCUG -22
Get sequence
|
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| Star sequence |
Pab-Mir-577_3p* (predicted) |
| mirBase accession | None |
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| Sequence |
37- GGUUUCAAUACUUUAUCUGCUC -59
Get sequence
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