| MirGeneDB ID | Pca-Novel-1 |
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| Family name |
PCA-NOVEL-1 (all species) |
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| Seed |
AGGCCAU |
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| Species |
Penis worm (Priapulus caudatus) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
P. caudatus
|
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| Node of Origin (family) |
P. caudatus
|
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Genome context
(Priapulus_caudatus_gca000485595v2) |
KQ714938.1: 413106-413164 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CAGCUUACGAACAAUCGUUGUUCGGUCUCUCAUAUUAAAUAUAUGGCCUAUCUAGAAAUAGAUACAAUAGGCCAUAUUUUUAGUAGGUCUGACCUGGCACGAAAACGACGUGAUCAAGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CAGCUUACGAACAAUCGU--| UC UCUCA U CUAGAAA
UGU GGUC UAUUAAA AUAUGGCCUAU \
ACG CCAG AUGAUUU UAUACCGGAUA U
CGAACUAGUGCAGCAAAAGC^ GU UCUGG U ACAUAGA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Pca-Novel-1_5p* |
| mirBase accession | None |
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| Sequence |
0- CAUAUUAAAUAUAUGGCCUAUC -22
Get sequence
|
|---|
| Mature sequence |
Pca-Novel-1_3p |
| mirBase accession | None |
|---|
| Sequence |
37- UAGGCCAUAUUUUUAGUAGGUC -59
Get sequence
|
|---|
