| MirGeneDB ID | Pca-Novel-2 |
|---|
| Family name |
PCA-NOVEL-2 (all species) |
|---|
| Seed |
CUAGCAU |
|---|
| Species |
Penis worm (Priapulus caudatus) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
P. caudatus
|
|---|
| Node of Origin (family) |
P. caudatus
|
|---|
Genome context
(Priapulus_caudatus_gca000485595v2) |
KQ715891.1: 63716-63775 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AACACGUGGCGUCCCCUGUAGGCGUAGGGCAGGGUAAUCUUGAUGCUAUGAGCUCGGCUUGCAAGGCUCUAGCAUUAGGAUUGGCUCCGUCCUGCCACGUGACAAUCUUCACAUAUUUGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AACACGUGGCGUCCCCU-----| A GU A - U UCGGC
GU GGC AGGGC GGGU AAUCUUGAUGCUA GAGC U
CA CCG UCCUG CUCG UUAGGAUUACGAU CUCG U
AGUUUAUACACUUCUAACAGUG^ - -- C G - GAACG
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Pca-Novel-2_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGGGUAAUCUUGAUGCUAUGAGC -23
Get sequence
|
|---|
| Mature sequence |
Pca-Novel-2_3p |
| mirBase accession | None |
|---|
| Sequence |
37- UCUAGCAUUAGGAUUGGCUCCGU -60
Get sequence
|
|---|
