| MirGeneDB ID | Pca-Novel-3-P1 |
|---|
| Family name |
PCA-NOVEL-3 (all species) |
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| Seed |
CACAACC |
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| Species |
Penis worm (Priapulus caudatus) |
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| MiRBase ID |
|
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| Paralogues |
Pca-Novel-3-P2
|
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| Orthologues |
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| Node of Origin (locus) |
P. caudatus
|
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| Node of Origin (family) |
P. caudatus
|
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Genome context
(Priapulus_caudatus_gca000485595v2) |
KQ715186.1: 93487-93548 [+]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
AGCUCACACGAUAUAUCCGUUGCGACGUCCACUUUCUCGGGAAGGUUGUAGUGAAUGAUUUACAAGCAUCACAACCACCCAAGAGGAAGUGGUCGUCGGCGGUCACUCUACAAUGCAAGCAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGCUCACACGAUAUAUC----| UG U -- AA A AAUGAU
CGU CGACG CCACUUUCUC GGG GGUUGU GUG \
GCG GCUGC GGUGAAGGAG CCC CCAACA UAC U
AACGAACGUAACAUCUCACUG^ -- U AA A- C GAACAU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Pca-Novel-3-P1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- ACUUUCUCGGGAAGGUUGUAGUG -23
Get sequence
|
|---|
| Mature sequence |
Pca-Novel-3-P1_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UCACAACCACCCAAGAGGAAGUGG -62
Get sequence
|
|---|
