MirGeneDB ID | Pca-Novel-3-P2 |
Family name |
PCA-NOVEL-3 (all species) |
Seed |
CUUUCUC |
Species |
Penis worm (Priapulus caudatus) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
|
Node of Origin (locus) |
P. caudatus
|
Node of Origin (family) |
P. caudatus
|
Genome context (Priapulus_caudatus_gca000485595v2) |
KQ715186.1: 93118-93177 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AACCACAGAGCUGUAUUCGGUCGCGUGGUUACUUUCUCGGGAGUUUGUUGUGUCCUGUUUACACCACCACAACCUCCCAUGAGGAAGCGGCUAUCGGCCACACUAUCAGCUGCACGCACG
Get precursor sequence
|
Structure | 10 20 30 40 50
AACCACAGAGCUGUAUUC--- C UA --| U U UCCUG
GGUCG GUGGU CUUUCUC GGGAG UUGU GUG U
CCGGC UAUCG GAAGGAG CCCUC AACA CAC U
GCACGCACGUCGACUAUCACA - GC UA^ C C CACAU
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Pca-Novel-3-P2_5p |
mirBase accession | None |
Sequence |
0- ACUUUCUCGGGAGUUUGUUGUG -22
Get sequence
|
Star sequence |
Pca-Novel-3-P2_3p* |
mirBase accession | None |
Sequence |
36- CCACAACCUCCCAUGAGGAAGCGG -60
Get sequence
|