| MirGeneDB ID | Pca-Novel-4 |
|---|
| Family name |
PCA-NOVEL-4 (all species) |
|---|
| Seed |
UGGCGUU |
|---|
| Species |
Penis worm (Priapulus caudatus) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
P. caudatus
|
|---|
| Node of Origin (family) |
P. caudatus
|
|---|
Genome context
(Priapulus_caudatus_gca000485595v2) |
KQ715038.1: 626891-626950 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GAAGCGCACUCGUGACAGGCACUGAAGUCUGACAAGACGCGCAACUGCCACAAUCGAUAUUUGAGUUAUGGCGUUACGCCGUGUUGUCAGAGUAGAGGGUGCGCGACCGACGGAAAUGUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GAAGCGCACUCGUGACAG GAAG-- G -| C U C UCGAU
GCACU UCUGACAA AC GCG AAC GCCA AA A
CGUGG AGACUGUU UG CGC UUG CGGU UU U
GUGUAAAGGCAGCCAGCG GAGAUG G C^ A - A GAGUU
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Pca-Novel-4_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GACAAGACGCGCAACUGCCACAA -23
Get sequence
|
|---|
| Mature sequence |
Pca-Novel-4_3p |
| mirBase accession | None |
|---|
| Sequence |
37- AUGGCGUUACGCCGUGUUGUCAG -60
Get sequence
|
|---|
