| MirGeneDB ID | Pca-Novel-5 |
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| Family name |
PCA-NOVEL-5 (all species) |
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| Seed |
UUGAAAG |
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| Species |
Penis worm (Priapulus caudatus) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
P. caudatus
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| Node of Origin (family) |
P. caudatus
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Genome context
(Priapulus_caudatus_gca000485595v2) |
KQ715186.1: 171157-171217 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GAUGGGCGUCGAUAGUGCCUGUAUGUCUGAUUUGAAAGGCCGAUUGUAAUCAUGCUAACAGUGAAUCCAUGAGCGGUCCGUCUUUCAUGCCAGAAGACAGGUUUGGGACAGCGUCGAAAAG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GAUGGGCGUCGAUAGUG---| AUG AUU C AA CUAACA
CCUGU UCUG UGAAAGGC GAUUGU UCAUG \
GGACA AGAC ACUUUCUG CUGGCG AGUAC G
GAAAAGCUGCGACAGGGUUU^ GA- CGU C -- CUAAGU
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Pca-Novel-5_5p |
| mirBase accession | None |
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| Sequence |
0- UUUGAAAGGCCGAUUGUAAUCAUG -24
Get sequence
|
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| Star sequence |
Pca-Novel-5_3p* |
| mirBase accession | None |
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| Sequence |
39- UGAGCGGUCCGUCUUUCAUGCC -61
Get sequence
|
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