| MirGeneDB ID | Pfl-Mir-4819 |
|---|
| Family name |
MIR-4819 (all species) |
|---|
| Seed |
CUUGGAC |
|---|
| Species |
Ptychodera (Ptychodera flava) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Sko-Mir-4819
|
|---|
| Node of Origin (locus) |
Enteropneusta
|
|---|
| Node of Origin (family) |
Enteropneusta
|
|---|
Genome context
(Pfl) |
LD344947.1: 75194-75252 [+]
|
|---|
Precursor
(pre-Mir +30nt flank) |
CCGAUCGCCUUUGAUUCGAUAAUUGCCCUCACUUGGACAUAAUGGAUGCGAGUUUGUAAAACCAUCUCGCGUCCGUUCUGUUCAUGAGUGGGAGUUAUUUUAAAACGCAACUUCGGAAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CCGAUCGCCUUUGAUUC--- G -| CU U UUUGUA
GAUAAUU CC CUCA UGGACA AAUGGAUGCGAG \
UUAUUGA GG GAGU ACUUGU UUGCCUGCGCUC A
AAAGGCUUCAACGCAAAAUU G U^ -- C UACCAA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There are multiple Dicer cuts on the 3p arm +1 and +3 relative to what is annotate here. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Pfl-Mir-4819_5p |
| mirBase accession | None |
|---|
| Sequence |
0- ACUUGGACAUAAUGGAUGCGAG -22
Get sequence
|
|---|
| Star sequence |
Pfl-Mir-4819_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- CGCGUCCGUUCUGUUCAUGAGU -59
Get sequence
|
|---|
