| MirGeneDB ID | Pfl-Mir-4825-P1a |
|---|
| Family name |
MIR-4825 (all species) |
|---|
| Seed |
CACACCU |
|---|
| Species |
Ptychodera (Ptychodera flava) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Pfl-Mir-4825-P1b
|
|---|
| Orthologues |
Sko-Mir-4825
|
|---|
| Node of Origin (locus) |
P. flava
|
|---|
| Node of Origin (family) |
Enteropneusta
|
|---|
Genome context
(Pfl) |
LD342864.1: 121309-121370 [+]
|
|---|
Precursor
(pre-Mir +30nt flank) |
UGGCCCUGCAAAAGGUGUGAUGUUGGGUAAGGGGACAGGGAUUGGUGUGGGGGUCUCAUUUCUACCACCUCACACCUUGACCUGUCAACCUUACCCACAUUACCAUAUCAACGAUUAACUAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGGCCCUGCAAAAGGUG---| U G- GAUU GUCUCAU
UGAUGU GGGUAAGG GACAGG GGUGUGGGG \
AUUACA CCCAUUCC CUGUCC CCACACUCC U
UAUCAAUUAGCAACUAUACC^ - AA AGUU ACCAUCU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Yes
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Pfl-Mir-4825-P1a_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GGGGACAGGGAUUGGUGUGGGG -22
Get sequence
|
|---|
| Mature sequence |
Pfl-Mir-4825-P1a_3p |
| mirBase accession | None |
|---|
| Sequence |
39- UCACACCUUGACCUGUCAACCUU -62
Get sequence
|
|---|
