MirGeneDB ID | Pfl-Novel-1 |
Family name |
PFL-NOVEL-1 (all species) |
Seed |
UUCAUCU |
Species |
Ptychodera (Ptychodera flava) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
|
Node of Origin (locus) |
P. flava
|
Node of Origin (family) |
P. flava
|
Genome context (Pfl) |
LD348073.1: 223086-223149 [-]
|
Precursor (pre-Mir +30nt flank) |
AAUCUAUUACGGUAUGUAGGUCUGAGUGGUGUUCAUCUUCACUGACUGCGCAGAUCUAUGUAAGUUGUACUGCGUGGUCAGUCUUGAUGAAAACCACUUGGGUCAAAUGUGGCAGCUGUCAGCC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AAUCUAUUACGGUAUGUA--|GU UG G UUC UG GAUCUAUG
G C AGUGGU UUCAUC ACUGAC CGCA U
C G UCACCA AAGUAG UGACUG GCGU A
CCGACUGUCGACGGUGUAAA^UG GU A UUC GU CAUGUUGA
120 110 100 90 80 70 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Pfl-Novel-1_5p |
mirBase accession | None |
Sequence |
0- GUUCAUCUUCACUGACUGCGCA -22
Get sequence
|
Star sequence |
Pfl-Novel-1_3p* |
mirBase accession | None |
Sequence |
42- CGUGGUCAGUCUUGAUGAAAAC -64
Get sequence
|