MirGeneDB 3.0

MirGeneDB ID

Pfl-Novel-1

Family name PFL-NOVEL-1 (all species)
Seed UUCAUCU
Species Ptychodera (Ptychodera flava)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) P. flava
Node of Origin (family) P. flava
Genome context
(Pfl)
LD348073.1: 223086-223149 [-]
Precursor
(pre-Mir +30nt flank)
AAUCUAUUACGGUAUGUAGGUCUGAGUGGUGUUCAUCUUCACUGACUGCGCAGAUCUAUGUAAGUUGUACUGCGUGGUCAGUCUUGAUGAAAACCACUUGGGUCAAAUGUGGCAGCUGUCAGCC
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Structure
        10          20        30        40        50        60 
AAUCUAUUACGGUAUGUA--|GU UG      G      UUC      UG    GAUCUAUG 
                    G  C  AGUGGU UUCAUC   ACUGAC  CGCA        U
                    C  G  UCACCA AAGUAG   UGACUG  GCGU        A
CCGACUGUCGACGGUGUAAA^UG GU      A      UUC      GU    CAUGUUGA 
  120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
To
Mature sequence

Pfl-Novel-1_5p

mirBase accessionNone
Sequence
0- GUUCAUCUUCACUGACUGCGCA -22
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Star sequence

Pfl-Novel-1_3p*

mirBase accessionNone
Sequence
42- CGUGGUCAGUCUUGAUGAAAAC -64
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