| MirGeneDB ID | Pfl-Novel-2 |
|---|
| Family name |
PFL-NOVEL-2 (all species) |
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| Seed |
AUUGUGU |
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| Species |
Ptychodera (Ptychodera flava) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
P. flava
|
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| Node of Origin (family) |
P. flava
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Genome context
(Pfl) |
LD353693.1: 57013-57071 [+]
|
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Precursor
(pre-Mir +30nt flank) |
AGUCAGUGAAGCUGGCUACACUCGUCAGGUAAUUGUGUUUGACUGCUGAAUUUCAACUUCUUAAAAUUUCAUCAGUCGAACACAACCACUUGACUAGUGUAAACUUCUCCUGCACUUGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGUCAGUGAAGCUGGCU--| C AA C UUUCAACU
ACACU GUCAGGU UUGUGUUUGACUG UGAA \
UGUGA CAGUUCA AACACAAGCUGAC ACUU U
CGUUCACGUCCUCUUCAAA^ U CC U UAAAAUUC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Pfl-Novel-2_5p |
| mirBase accession | None |
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| Sequence |
0- AAUUGUGUUUGACUGCUGAAUU -22
Get sequence
|
|---|
| Star sequence |
Pfl-Novel-2_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- UUCAUCAGUCGAACACAACCAC -59
Get sequence
|
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