MirGeneDB 2.1

MirGeneDB ID

Pfl-Novel-3

Family name PFL-NOVEL-3 (all species)
Seed CGUGUAA
Species Ptychodera (Ptychodera flava)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) P. flava
Node of Origin (family) P. flava
Genome context
(Pfl)
LD361500.1: 8168-8234 [-]
Precursor
(pre-Mir +30nt flank)
GUACGUCCACCUUGAAUGGGUUAUUUGCAAUCGUGUAACGGUGUAUUAUGCUGUGAUUAGUCGUUGUAAACAUCAGCAGAUACACUCUUACAUGAAUGCUAGUAACUGUAUUAUCAUCAGAGACUGA
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Structure
        10          20        30        40        50        60   
GUACGUCCACCUUGAAUG--|      U   A        C        A     UGAUUAGUC 
                    GGUUAUU GCA UCGUGUAA GGUGUAUU UGCUG         G
                    UCAAUGA CGU AGUACAUU UCACAUAG ACGAC         U
AGUCAGAGACUACUAUUAUG^      U   A        C        -     UACAAAUGU 
     120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Pfl-Novel-3_5p

mirBase accessionNone
Sequence
0- UCGUGUAACGGUGUAUUAUGCUG -23
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Star sequence

Pfl-Novel-3_3p*

mirBase accessionNone
Sequence
45- GCAGAUACACUCUUACAUGAAU -67
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