MirGeneDB 3.0
MirGeneDB ID

Ple-Novel-2-P1

Family name PLE-NOVEL-2 (all species)
Seed CGAUCAC
Species Thorny-headed worm 2 (Pomphorhynchus laevis)
MiRBase ID
Paralogues Ple-Novel-2-P2 
Orthologues
Node of Origin (locus) P. laevis
Node of Origin (family) P. laevis
Genome context
(GCA_012934845.2_ASM1293484v2_PLE_genomic)		 WNNJ02001239.1: 248259-248379 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UCUUUCAUUAAAACUAAAUGCCAAAAAACCAGAUGAGUCGAGUAAUCGUCAGUCACAUUAAAAAUCAGCUACUCAUCAGCUACUGAUCUAUUACAUAUAUUUCGUGUUUGGGUUCUUUUAACGUUGGCUGACGAUCACUUGACUCGUCUUCUUUAAAUUCUAUUUAAAAGGAUCGAAACGU
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Structure
        10        20        30          40        50        60        70        80          
UCUUUCAUUAAAACUAAAUGCCAAAAAACC--|            A       GUCACAUUAAAAAUCAGCUACUCAUCAGCUACUGAUCU 
                                AGAUGAGUCGAGU AUCGUCA                                      \
                                UCUGCUCAGUUCA UAGCAGU                                      A
UGCAAAGCUAGGAAAAUUUAUCUUAAAUUUCU^            C       CGGUUGCAAUUUUCUUGGGUUUGUGCUUUAUAUACAUU 
 .       170       160       150       140       130       120       110       100
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
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Star sequence

Ple-Novel-2-P1_5p*
mirBase accessionNone
Sequence 
0- AGAUGAGUCGAGUAAUCGUCA -21
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Mature sequence

Ple-Novel-2-P1_3p
mirBase accessionNone
Sequence 
100- ACGAUCACUUGACUCGUCUUC -121
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