| MirGeneDB ID | Ple-Novel-2-P1 |
|---|---|
| Family name | PLE-NOVEL-2 (all species) |
| Seed | CGAUCAC |
| Species | Thorny-headed worm 2 (Pomphorhynchus laevis) |
| MiRBase ID | |
| Paralogues | Ple-Novel-2-P2 |
| Orthologues | |
| Node of Origin (locus) | P. laevis |
| Node of Origin (family) | P. laevis |
| Genome context (GCA_012934845.2_ASM1293484v2_PLE_genomic) |
WNNJ02001239.1: 248259-248379 [-] Ensembl |
| Precursor (pre-Mir +30nt flank) | UCUUUCAUUAAAACUAAAUGCCAAAAAACCAGAUGAGUCGAGUAAUCGUCAGUCACAUUAAAAAUCAGCUACUCAUCAGCUACUGAUCUAUUACAUAUAUUUCGUGUUUGGGUUCUUUUAACGUUGGCUGACGAUCACUUGACUCGUCUUCUUUAAAUUCUAUUUAAAAGGAUCGAAACGUGet precursor sequence |
| Structure | 10 20 30 40 50 60 70 80 UCUUUCAUUAAAACUAAAUGCCAAAAAACC--| A GUCACAUUAAAAAUCAGCUACUCAUCAGCUACUGAUCU AGAUGAGUCGAGU AUCGUCA \ UCUGCUCAGUUCA UAGCAGU A UGCAAAGCUAGGAAAAUUUAUCUUAAAUUUCU^ C CGGUUGCAAUUUUCUUGGGUUUGUGCUUUAUAUACAUU . 170 160 150 140 130 120 110 100 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | No |
| Star sequence | Ple-Novel-2-P1_5p* |
| mirBase accession | None |
| Sequence |
0- AGAUGAGUCGAGUAAUCGUCA -21
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|
| Mature sequence | Ple-Novel-2-P1_3p |
| mirBase accession | None |
| Sequence |
100- ACGAUCACUUGACUCGUCUUC -121
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|
