MirGeneDB ID | Ple-Novel-2-P2 |
---|---|
Family name | PLE-NOVEL-2 (all species) |
Seed | CGAUCAC |
Species | Thorny-headed worm 2 (Pomphorhynchus laevis) |
MiRBase ID | |
Paralogues | Ple-Novel-2-P1 |
Orthologues | |
Node of Origin (locus) | P. laevis |
Node of Origin (family) | P. laevis |
Genome context (GCA_012934845.2_ASM1293484v2_PLE_genomic) |
WNNJ02001239.1: 258258-258378 [-] Ensembl |
Precursor (pre-Mir +30nt flank) | CUUUCAUUAAAACUAAAUGCCAAAAAAAUCAGAUGAGUCGAGUAAUCGUCAGUCACAUUAAAAAUCAGCUACUCAUCAGCUACUGAUAUAAUACAUAUAUUUCGUGUUUGGGUUCUUUUACCGUUGGCUGACGAUCACUUGACUCGUCUUCUUUUAAUUCUAUUGAAAAGGACCGAAACGUGet precursor sequence |
Structure | 10 20 30 40 50 60 70 80 CUUUCAUUAAAACUAAAUGCCAAA--| UC A GUCACAUUAAAAAUCAGCUACUCAUCAGCUACUGAUAU AAAA AGAUGAGUCGAGU AUCGUCA \ UUUU UCUGCUCAGUUCA UAGCAGU A UGCAAAGCCAGGAAAAGUUAUCUUAA^ CU C CGGUUGCCAUUUUCUUGGGUUUGUGCUUUAUAUACAUA . 170 160 150 140 130 120 110 100 |
Deep sequencing | |
3' NTU | No |
Motifs | No |
Star sequence | Ple-Novel-2-P2_5p* |
mirBase accession | None |
Sequence |
0- AGAUGAGUCGAGUAAUCGUCA -21
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|
Mature sequence | Ple-Novel-2-P2_3p |
mirBase accession | None |
Sequence |
100- ACGAUCACUUGACUCGUCUUC -121
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