MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-153-o3

Family name MIR-153 (all species)
Seed UGCAUAG
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-153-3
Paralogues Pma-Mir-153-o1  Pma-Mir-153-o2 
Orthologues Agr-Mir-153  Asu-Mir-153  Bfl-Mir-153  Bko-Mir-153  Bla-Mir-153  Bpl-Mir-153  Cin-Mir-153  Cte-Mir-153  Dgr-Mir-153  Dma-Mir-153  Dpu-Mir-153  Eba-Mir-153  Egr-Mir-153  Gsa-Mir-153  Gsp-Mir-153  Hmi-Mir-153  Hru-Mir-153  Isc-Mir-153  Lan-Mir-153  Lgi-Mir-153  Llo-Mir-153  Mgi-Mir-153  Mom-Mir-153  Npo-Mir-153  Obi-Mir-153  Ofu-Mir-153  Ovu-Mir-153  Pau-Mir-153  Pca-Mir-153  Pcr-Mir-153  Pdu-Mir-153  Pfl-Mir-153  Pmi-Mir-153  Pve-Mir-153  Rph-Mir-153  Sko-Mir-153  Sme-Mir-153  Snu-Mir-153  Spu-Mir-153  Tur-Mir-153  War-Mir-153  Xbo-Mir-153 
Node of Origin (locus) P. marinus
Node of Origin (family) Bilateria
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046102.1: 491761-491824 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAGCCGGCGCCGUGCGUGGCUGUGGCCGAUAUCAUUUUUGUGACCUGCAGCUUGUACCCUCGCCGCCCAGUUGCAUAGUCACAAAAGUGAUCAUCGGAGGCAGCCGCCCUCCGCACACCUACAG
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Structure
        10          20        30         40         50        60
GAGCCGGCGCCGUGCGU--      GG     -              C-|      UGUACCC 
                   GGCUGU  CCGAU AUCAUUUUUGUGAC  UGCAGCU       U
                   CCGACG  GGCUA UAGUGAAAACACUG  ACGUUGA       C
GACAUCCACACGCCUCCCG      GA     C              AU^      CCCGCCG 
  120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-153-o3_5p* (predicted)
mirBase accessionNone
Sequence 
0- AUCAUUUUUGUGACCUGCAGCU -22
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Mature sequence

Pma-Mir-153-o3_3p
mirBase accessionMIMAT0019484
Sequence 
40- UUGCAUAGUCACAAAAGUGAUCAU -64
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