MirGeneDB ID | Pma-Mir-153-o2 |
Family name |
MIR-153 (all species) |
Seed |
UGCAUAG |
Species |
Sea Lamprey (Petromyzon marinus) |
MiRBase ID |
pma-mir-153-2
|
Paralogues |
Pma-Mir-153-o1
Pma-Mir-153-o3
|
Orthologues |
Aca-Mir-153-P2
Ami-Mir-153-P2
Asu-Mir-153
Bfl-Mir-153
Bla-Mir-153
Bpl-Mir-153
Bta-Mir-153-P2
Cfa-Mir-153-P2
Cgi-Mir-153
Cin-Mir-153
Cli-Mir-153-P2
Cmi-Mir-153-P2
Cpi-Mir-153-P2
Cte-Mir-153
Dma-Mir-153
Dno-Mir-153-P2
Dpu-Mir-153
Dre-Mir-153-P2a
Dre-Mir-153-P2b
Gga-Mir-153-P2
Gja-Mir-153-P2
Gmo-Mir-153-P2a
Hsa-Mir-153-P2
Isc-Mir-153
Lan-Mir-153
Lch-Mir-153-P2
Lgi-Mir-153
Loc-Mir-153-P2
Mal-Mir-153-P2a
Mal-Mir-153-P2b
Mdo-Mir-153-P2
Mml-Mir-153-P2
Mun-Mir-153-P2
Npo-Mir-153
Oan-Mir-153-P2
Obi-Mir-153
Ovu-Mir-153
Pbv-Mir-153-P2
Pfl-Mir-153
Pmi-Mir-153
Sha-Mir-153-P2
Sko-Mir-153
Sme-Mir-153
Spt-Mir-153-P2
Spu-Mir-153
Sto-Mir-153-P2
Tgu-Mir-153-P2
Tni-Mir-153-P2a
Tni-Mir-153-P2b
Xbo-Mir-153
Xla-Mir-153-P2c
Xla-Mir-153-P2d
Xtr-Mir-153-P2
|
Node of Origin (locus) |
P. marinus
|
Node of Origin (family) |
Bilateria
|
Genome context (GCF_010993605.1_kPetMar1.pri_genomic) |
NC_046087.1: 10331164-10331225 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
ACGACGCCUGCAAACGUGCCGGCGGCUGAUGUCAUUUUUGUGAUUUGCAACUCGUUUUACGUGUGAAGUUGCAUAGUCACAAAAGUGAUCAUCAGAGGCCUGGGGCCCUGCCAGCAAAGCAU
Get precursor sequence
|
Structure | 10 20 30 40 50
ACGACGCCUGCAAACGUG- - GG - -| CGUUUU
CC GGC CUGAUG UCAUUUUUGUGAUU UGCAACU A
GG CCG GACUAC AGUGAAAACACUGA ACGUUGA C
UACGAAACGACCGUCCCGG U GA U U^ AGUGUG
120 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
Br |
Gi |
Gu |
He |
Ki |
La |
Li |
Mo |
Mu |
Sk |
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Star sequence |
Pma-Mir-153-o2_5p* |
mirBase accession | None |
Sequence |
0- GUCAUUUUUGUGAUUUGCAACU -22
Get sequence
|
Mature sequence |
Pma-Mir-153-o2_3p |
mirBase accession | MIMAT0019484 |
Sequence |
38- UUGCAUAGUCACAAAAGUGAUCAU -62
Get sequence
|